Browsing by Author "Farrer, Rhys A"
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Item Chromosomal copy number variation, selection and uneven rates of recombination reveal cryptic genome diversity linked to pathogenicity(2013-08-15) Farrer, Rhys A; Henk, Daniel A; Garner, Trenton W J; Balloux, Francois; Woodhams, Douglas C; Fisher, Matthew C; University of Aberdeen.Medical SciencesItem Development and worldwide use of non-lethal, and minimal population-level impact, protocols for the isolation of amphibian chytrid fungi(2018-05-17) Fisher, Matthew C; Ghosh, Pria; Shelton, Jennifer M G; Bates, Kieran; Brookes, Lola; Wierzbicki, Claudia; Rosa, Gonçalo M; Farrer, Rhys A; Aanensen, David M; Alvarado-Rybak, Mario; Bataille, Arnaud; Berger, Lee; Böll, Susanne; Bosch, Jaime; Clare, Frances C; A Courtois, Elodie; Crottini, Angelica; Cunningham, Andrew A; Doherty-Bone, Thomas M; Gebresenbet, Fikirte; Gower, David J; Höglund, Jacob; James, Timothy Y; Jenkinson, Thomas S; Kosch, Tiffany A; Lambertini, Carolina; Laurila, Anssi; Lin, Chun-Fu; Loyau, Adeline; Martel, An; Meurling, Sara; Miaud, Claude; Minting, Pete; Ndriantsoa, Serge; O'Hanlon, Simon J; Pasmans, Frank; Rakotonanahary, Tsanta; Rabemananjara, Falitiana C E; Ribeiro, Luisa P; Schmeller, Dirk S; Schmidt, Benedikt R; Skerratt, Lee; Smith, Freya; Soto-Azat, Claudio; Tessa, Giulia; Toledo, Luís Felipe; Valenzuela-Sánchez, Andrés; Verster, Ruhan; Vörös, Judit; Waldman, Bruce; Webb, Rebecca J; Weldon, Che; Wombwell, Emma; Zamudio, Kelly R; Longcore, Joyce E; Garner, Trenton W J; University of Aberdeen.Medical SciencesItem Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen(2012-10-04) Cooke, David E L; Cano, Liliana M; Raffaele, Sylvain; Bain, Ruairidh A; Cooke, Louise R; Etherington, Graham J; Deahl, Kenneth L; Farrer, Rhys A; Gilroy, Eleanor M; Goss, Erica M; Grünwald, Niklaus J; Hein, Ingo; MacLean, Daniel; McNicol, James W; Randall, Eva; Oliva, Ricardo F; Pel, Mathieu A; Shaw, David S; Squires, Julie N; Taylor, Moray C; Vleeshouwers, Vivianne G A A; Birch, Paul R. J.; Lees, Alison K; Kamoun, Sophien; University of Aberdeen.Medical SciencesItem Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides(2016-10-06) Muñoz, José F; Farrer, Rhys A; Desjardins, Christopher A; Gallo, Juan E; Sykes, Sean; Sakthikumar, Sharadha; Misas, Elizabeth; Whiston, Emily A; Bagagli, Eduardo; Soares, Celia M A; Teixeira, Marcus de M; Taylor, John W; Clay, Oliver K; McEwen, Juan G; Cuomo, Christina A; University of Aberdeen.Medical SciencesItem Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii(2015-09-01) Farrer, Rhys A; Desjardins, Christopher A; Sakthikumar, Sharadha; Gujja, Sharvari; Saif, Sakina; Zeng, Qiandong; Chen, Yuan; Voelz, Kerstin; Heitman, Joseph; May, Robin C; Fisher, Matthew C; Cuomo, Christina A; University of Aberdeen.Medical SciencesItem Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris(2018-03-29) Rhodes, Johanna; Abdolrasouli, Alireza; Farrer, Rhys A; Cuomo, Christina A; Aanensen, David M; Armstrong-James, Darius; Fisher, Matthew C; Schelenz, Silke; University of Aberdeen.Medical SciencesItem Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi(2017-03-21) Farrer, Rhys A; Martel, An; Verbrugghe, Elin; Abouelleil, Amr; Ducatelle, Richard; Longcore, Joyce E; James, Timothy Y; Pasmans, Frank; Fisher, Matthew C; Cuomo, Christina A; University of Aberdeen.Medical SciencesItem Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen(2018-09-11) Ene, Iuliana V; Farrer, Rhys A; Hirakawa, Matthew P; Agwamba, Kennedy; Cuomo, Christina A; Bennett, Richard J; University of Aberdeen.Medical SciencesItem Hsf1 and Hsp90 orchestrate temperature-dependent global transcriptional remodelling and chromatin architecture in Candida albicans(2016-05-26) Leach, Michelle D; Farrer, Rhys A; Tan, Kaeling; Miao, Zhengqiang; Walker, Louise A; Cuomo, Christina A; Wheeler, Robert T; Brown, Alistair J P; Wong, Koon Ho; Cowen, Leah E; University of Aberdeen.Centre for Genome-Enabled Biology and Medicine; University of Aberdeen.Medical SciencesItem MARDy : Mycology Antifungal Resistance Database(2018-09-15) Nash, Anthony; Sewell, Thomas; Farrer, Rhys A; Abdolrasouli, Alireza; Shelton, Jennifer M G; Fisher, Matthew C; Rhodes, Johanna; University of Aberdeen.Medical SciencesItem Microevolution of Serial Clinical Isolates of Cryptococcus neoformans var. grubii and C. gattii(2017-03) Chen, Yuan; Farrer, Rhys A; Giamberardino, Charles; Sakthikumar, Sharadha; Jones, Alexander; Yang, Timothy; Tenor, Jennifer L; Wagih, Omar; Van Wyk, Marelize; Govender, Nelesh P; Mitchell, Thomas G; Litvintseva, Anastasia P; Cuomo, Christina A; Perfect, John R; University of Aberdeen.Medical SciencesItem Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii(2016-12-05) Farrer, Rhys A; Voelz, Kerstin; Henk, Daniel A; Johnston, Simon A; Fisher, Matthew C; May, Robin C; Cuomo, Christina A; University of Aberdeen.Medical SciencesItem Nine Things Genomics Can Tell Us About Candida auris(2020-04-15) Chybowska, Aleksandra D; Childers, Delma S; Farrer, Rhys A; University of Aberdeen.Medical SciencesItem Population genetics and microevolution of clinical Candida glabrata reveals recombinant sequence types and hyper-variation within mitochondrial genomes, virulence genes and drug-targets(2022-05) Helmstetter, Nicolas; Chybowska, Aleksandra D; Delaney, Christopher; da Silva Dantas, Alessandra; Gifford, Hugh; Wacker, Theresa; Munro, Carol; Warris, Adilia; Jones, Brian L.; Cuomo, Christina A; Wilson, Duncan; Ramage, Gordon; Farrer, Rhys A; University of Aberdeen.Institute of Medical Sciences; University of Aberdeen.Medical SciencesItem Synima : a Synteny imaging tool for annotated genome assemblies(2017-11-21) Farrer, Rhys A; University of Aberdeen.Medical SciencesItem Transcriptional Heterogeneity of Cryptococcus gattii VGII Compared with Non-VGII Lineages Underpins Key Pathogenicity Pathways(2018-10-24) Farrer, Rhys A; Ford, Christopher B; Rhodes, Johanna; Delorey, Toni; May, Robin C; Fisher, Matthew C; Cloutman-Green, Elaine; Balloux, Francois; Cuomo, Christina A; University of Aberdeen.Medical SciencesItem Transmission of Hypervirulence traits via sexual reproduction within and between lineages of the human fungal pathogen cryptococcus gattii(2013-09-05) Voelz, Kerstin; Ma, Hansong; Phadke, Sujal; Byrnes, Edmond J; Zhu, Pinkuan; Mueller, Olaf; Farrer, Rhys A; Henk, Daniel A; Lewit, Yonathan; Hsueh, Yen-Ping; Fisher, Matthew C; Idnurm, Alexander; Heitman, Joseph; May, Robin C; University of Aberdeen.Medical SciencesItem Using false discovery rates to benchmark SNP-callers in next-generation sequencing projects(2013-03-21) Farrer, Rhys A; Henk, Daniel A; MacLean, Dan; Studholme, David J; Fisher, Matthew C; University of Aberdeen.Medical Sciences