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dc.contributor.authorKarcher, Nicolai
dc.contributor.authorPasolli, Edoardo
dc.contributor.authorAsnicar, Francesco
dc.contributor.authorHuang, Kun D.
dc.contributor.authorTett, Adrian
dc.contributor.authorManara, Serena
dc.contributor.authorArmanini, Federica
dc.contributor.authorBain, Debbie
dc.contributor.authorDuncan, Sylvia H.
dc.contributor.authorLouis, Petra
dc.contributor.authorZolfo, Moreno
dc.contributor.authorManghi, Paolo
dc.contributor.authorValles-Colomer, Mireia
dc.contributor.authorRaffaetà, Roberta
dc.contributor.authorRota-Stabelli, Omar
dc.contributor.authorCollado, Maria Carmen
dc.contributor.authorZeller, Georg
dc.contributor.authorFalush, Daniel
dc.contributor.authorMaixner, Frank
dc.contributor.authorWalker, Alan W.
dc.contributor.authorHuttenhower, Curtis
dc.contributor.authorSegata, Nicola
dc.date.accessioned2020-06-10T11:05:01Z
dc.date.available2020-06-10T11:05:01Z
dc.date.issued2020-06-08
dc.identifier.citationKarcher , N , Pasolli , E , Asnicar , F , Huang , K D , Tett , A , Manara , S , Armanini , F , Bain , D , Duncan , S H , Louis , P , Zolfo , M , Manghi , P , Valles-Colomer , M , Raffaetà , R , Rota-Stabelli , O , Collado , M C , Zeller , G , Falush , D , Maixner , F , Walker , A W , Huttenhower , C & Segata , N 2020 , ' Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations ' , Genome Biology , vol. 21 , 138 . https://doi.org/10.1186/s13059-020-02042-yen
dc.identifier.issn1474-760X
dc.identifier.otherPURE: 170815435
dc.identifier.otherPURE UUID: 665d56e3-355f-44fe-9981-519e0cee3fb1
dc.identifier.otherScopus: 85086297066
dc.identifier.otherPubMed: 32513234
dc.identifier.otherWOS: 000540840900002
dc.identifier.otherORCID: /0000-0003-2115-2399/work/76973768
dc.identifier.otherORCID: /0000-0002-4903-0978/work/76975498
dc.identifier.otherORCID: /0000-0001-5099-8495/work/79062828
dc.identifier.urihttps://hdl.handle.net/2164/14478
dc.descriptionFunding This work was supported by NIH NHGRI grant R01HG005220, NIDDK grant R24DK110499, NIDDK grant U54DE023798, and CMIT grant 6935956 to C.H., and by the European Research Council (ERC-STG project MetaPG-716575), MIUR “Futuro in Ricerca” RBFR13EWWI_001, the European Union (H2020-SFS-2018-1 project MASTER-818368 and H2020-SC1-BHC project ONCOBIOME-825410), and the National Cancer Institute of the National Institutes of Health (1U01CA230551) to N.S. Further support was provided by the Programma Ricerca Budget prestazioni Eurac 2017 of the Province of Bolzano, Italy to F.M., and by the EU-H2020 (DiMeTrack-707345) to E.P. and N.S. D.B., S.H.D., P.L., A.W.W. and The Rowett Institute received core funding support from the Scottish Government Rural and Environmental Sciences and Analytical Services (SG-RESAS). Availability of data and materials All datasets used in this study are publicly available and matched with their respective PMID (Additional file 5). The high-quality E. rectale MAGs in fasta format and a metadata file are available at http://segatalab.cibio.unitn.it/data/Erectale_Karcher_et_al.html and in the following Zenodo repository: https://doi.org/10.5281/zenodo.3763191 [80]. The two new isolate genomes L2–21 and T3BWe13 have been uploaded to NCBI and can be found in RefSeq under the accession numbers GCF_008122485.1 [81] and GCF_008123415.1 [82], respectively.en
dc.format.extent27
dc.language.isoeng
dc.relation.ispartofGenome Biologyen
dc.rights© The Author(s). 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.en
dc.subjectBUTYRATE-PRODUCING BACTERIAen
dc.subjectGUT MICROBIOMEen
dc.subjectALIGNMENTen
dc.subjectTRANSMISSIONen
dc.subjectCSRAen
dc.subjectTOOLen
dc.subjectQH426 Geneticsen
dc.subjectGeneticsen
dc.subjectEcology, Evolution, Behavior and Systematicsen
dc.subjectCell Biologyen
dc.subjectRural and Environmental Science and Analytical Services (RESAS)en
dc.subjectEuropean Research Councilen
dc.subjectMetaPG-716575en
dc.subjectEuropean Commissionen
dc.subjectMASTER-818368en
dc.subjectONCOBIOME-825410en
dc.subjectSupplementary Dataen
dc.subject.lccQH426en
dc.titleAnalysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptationsen
dc.typeJournal articleen
dc.contributor.institutionUniversity of Aberdeen.Rowett Instituteen
dc.description.statusPeer revieweden
dc.description.versionPublisher PDFen
dc.identifier.doihttps://doi.org/10.1186/s13059-020-02042-y
dc.identifier.urlhttp://www.scopus.com/inward/record.url?scp=85086297066&partnerID=8YFLogxKen


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