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Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification

dc.contributor.authorRobertson, Fiona M
dc.contributor.authorGundappa, Manu Kumar
dc.contributor.authorGrammes, Fabian
dc.contributor.authorHvidsten, Torgeir R.
dc.contributor.authorRedmond, Anthony
dc.contributor.authorLien, Sigbjorn
dc.contributor.authorHolland, Peter W.H.
dc.contributor.authorMartin, Samuel A. M.
dc.contributor.authorSandve, Simen R.
dc.contributor.authorMacQueen, Daniel J.
dc.date.accessioned2017-06-26T10:00:10Z
dc.date.available2017-06-26T10:00:10Z
dc.date.issued2017-06-14
dc.identifier.citationRobertson , F M , Gundappa , M K , Grammes , F , Hvidsten , T R , Redmond , A , Lien , S , Holland , P W H , Martin , S A M , Sandve , S R & MacQueen , D J 2017 , ' Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification ' , Genome Biology , vol. 18 , 111 . https://doi.org/10.1186/s13059-017-1241-zen
dc.identifier.issn1474-760X
dc.identifier.otherPURE: 100834556
dc.identifier.otherPURE UUID: 9e7a73fc-5d0e-47b7-ab03-1906455c1c45
dc.identifier.otherPubMed: 28615063
dc.identifier.otherScopus: 85020715202
dc.identifier.urihttp://hdl.handle.net/2164/8868
dc.descriptionFunding The study was funded by a Natural Environment Research Council (NERC) grant (NBAF704). FMR is funded by a NERC Doctoral Training Grant (NE/L50175X/1). MKG is funded by an Elphinstone PhD Scholarship from the University of Aberdeen, with additional financial support from a scholarship from the Government of Karnataka, India. Availability of data and materials Illumina sequence reads for the sequence capture study were deposited in NCBI (Bioproject PRJNA325617). All sequence alignments and phylogenetic trees used for phylogenomics are provided in Additional file 2 . Illumina sequence reads for the tissue expression study performed under controlled conditions can be found in the NCBI SRA database (accessions SRX608594, SRS64003, SRS640030, SRS640015, SRS640003, SRS639997, SRS639041, SRS640021, SRS639990l, SRS639861, SRS640009, SRS639992, SRS639037, SRS640002, SRS639994). Illumina sequence reads for the fresh to saltwater transition experiment were deposited in the European Nucleotide Archive (accession number SRP095919).en
dc.format.extent14
dc.language.isoeng
dc.relation.ispartofGenome Biologyen
dc.rightsThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.en
dc.subjectwhole genome duplicationen
dc.subjectrediploidizationen
dc.subjectspecies radiationen
dc.subjectLineage-specific Ohnologue Resolution (LORe)en
dc.subjectduplicate genesen
dc.subjectfunctional divergenceen
dc.subjectautotetraploidizationen
dc.subjectsalmonid fishen
dc.subjectQH301 Biologyen
dc.subjectNatural Environment Research Council (NERC)en
dc.subjectNE/L50175X/1en
dc.subjectNBAF704en
dc.subjectSupplementary Dataen
dc.subject.lccQH301en
dc.titleLineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversificationen
dc.typeJournal articleen
dc.contributor.institutionUniversity of Aberdeen.Biological Sciencesen
dc.contributor.institutionUniversity of Aberdeen.Biological Sciencesen
dc.contributor.institutionUniversity of Aberdeen.Marine Alliance for Science and Technology for Scotland (MASTS)en
dc.contributor.institutionUniversity of Aberdeen.Scottish Fish Immunology Research Centreen
dc.description.statusPeer revieweden
dc.description.versionPublisher PDFen
dc.identifier.doihttps://doi.org/10.1186/s13059-017-1241-z
dc.identifier.vol18en


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