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Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations

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dc.contributor.authorHarder, Christoffer Bugge
dc.contributor.authorMiyauchi, Shingo
dc.contributor.authorVirágh, Máté
dc.contributor.authorKuo, Alan
dc.contributor.authorThoen, Ella
dc.contributor.authorAndreopoulos, Bill
dc.contributor.authorLu, Dabao
dc.contributor.authorSkrede, Inger
dc.contributor.authorDrula, Elodie
dc.contributor.authorHenrissat, Bernard
dc.contributor.authorMorin, Emmanuelle
dc.contributor.authorKohler, Annegret
dc.contributor.authorBarry, Kerrie
dc.contributor.authorLaButti, Kurt
dc.contributor.authorSalamov, Asaf
dc.contributor.authorLipzen, Anna
dc.contributor.authorMerényi, Zsolt
dc.contributor.authorHegedüs, Botond
dc.contributor.authorBaldrian, Petr
dc.contributor.authorStursova, Martina
dc.contributor.authorWeitz, Hedda
dc.contributor.authorTaylor, Andy
dc.contributor.authorKoriabine, Maxim
dc.contributor.authorSavage, Emily
dc.contributor.authorGrigoriev, Igor V.
dc.contributor.authorNagy, László G.
dc.contributor.authorMartin, Francis
dc.contributor.authorKauserud, Håvard
dc.contributor.institutionUniversity of Aberdeen.Biological Sciencesen
dc.date.accessioned2024-08-20T08:27:03Z
dc.date.available2024-08-20T08:27:03Z
dc.date.issued2024-07-10
dc.descriptionWe are highly grateful to Thomas Kehlet, Arne Aronsen, and Thomas L\u00E6ss\u00F8e for very valuable help in locating several of the Mycena specimens for culturing. We furthermore wish to thank Cecilie Mathiesen, Jacqueline Hess, and Anna Sterngren for their laboratory assistance and very useful practical suggestions. C.B.H. H.K. I.S. A.T. F.M. and L.G.N. conceived and designed the study. F.M. is coordinating the JGI CSP \u201C1KFG: Deep sequencing of ecologically-relevant Dikarya.\u201D C.B.H. and H.K. conducted fieldwork and collected new Mycena cultures. C.B.H. isolated and grew Mycena cultures, and A.T. and H.W. provided additional cultures. C.B.H. E.T. and D.L. performed DNA/RNA extraction. P.B. and M.S. analyzed the enzyme cultures. A.L. K.B. N.B. K.L. A. Kuo, and I.V.G. handled nucleic acids and sequenced, assembled, and annotated the genomes. S.M. performed the comparative secretomic, TE, and genomic analyses. A. Kuo, V.M. Z.M. and L.G.N. analyzed the genome evolution and genomic stability genes. C.B.H. V.M. Z.M. and L.G.N. performed standard/multivariate statistical tests. E.M. and A. Kuo helped analyze the TE annotation. C.B.H. L.G.N. F.M. and S.M. wrote the first version of the manuscript and crafted the revision. All authors helped finalize the manuscript and read and approved it before submission. The authors declare no competing interests. Publisher Copyright: © 2024 The Authorsen
dc.description.statusPeer revieweden
dc.format.extent24
dc.format.extent7416133
dc.identifier291960640
dc.identifier06e4961a-cf26-4929-89eb-9f5798f06776
dc.identifier85198033926
dc.identifier.citationHarder, C B, Miyauchi, S, Virágh, M, Kuo, A, Thoen, E, Andreopoulos, B, Lu, D, Skrede, I, Drula, E, Henrissat, B, Morin, E, Kohler, A, Barry, K, LaButti, K, Salamov, A, Lipzen, A, Merényi, Z, Hegedüs, B, Baldrian, P, Stursova, M, Weitz, H, Taylor, A, Koriabine, M, Savage, E, Grigoriev, I V, Nagy, L G, Martin, F & Kauserud, H 2024, 'Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations', Cell Genomics, vol. 4, no. 7, 100586. https://doi.org/10.1016/j.xgen.2024.100586en
dc.identifier.doi10.1016/j.xgen.2024.100586
dc.identifier.issn2666-979X
dc.identifier.otherORCID: /0009-0000-6758-5697/work/169079419
dc.identifier.urihttps://hdl.handle.net/2164/24066
dc.identifier.urlhttps://www.scopus.com/pages/publications/85198033926en
dc.language.isoeng
dc.relation.ispartofCell Genomicsen
dc.subjectArctic biologyen
dc.subjectbiotrophy–saprotrophy evolutionen
dc.subjectcarbon degradationen
dc.subjectfungal genomicsen
dc.subjectfungal guilden
dc.subjectgenome size diversityen
dc.subjectplant-fungus interactionsen
dc.subjectroot-associationsen
dc.subjectsaprotrophsen
dc.subjectTE proliferationen
dc.subjectQH301 Biologyen
dc.subjectBiochemistry, Genetics and Molecular Biology (miscellaneous)en
dc.subjectGeneticsen
dc.subjectSupplementary Informationen
dc.subjecthttps://doi.org/10.1016/j.xgen.2024.100586en
dc.subject.lccQH301en
dc.titleExtreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializationsen
dc.typeJournal articleen

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