Investigating the impact of database choice on the accuracy of metagenomic read classification for the rumen microbiome
| dc.contributor.author | Smith, Rebecca Louise | |
| dc.contributor.author | Glendinning, Laura | |
| dc.contributor.author | Walker, Alan | |
| dc.contributor.author | Watson, Mick | |
| dc.contributor.institution | University of Aberdeen.Rowett Institute | en |
| dc.date.accessioned | 2022-10-02T20:34:00Z | |
| dc.date.available | 2022-10-02T20:34:00Z | |
| dc.date.issued | 2022-11-18 | |
| dc.description | The Roslin Institute forms part of the Royal (Dick) School of Veterinary Studies, University of Edinburgh. This project was supported by the Biotechnology and Biological Sciences Research Council (BBSRC; BB/S006680/1, BB/R015023/1), including institute strategic program grant BBS/E/D/30002276. R.H.S. is supported by an EASTBIO studentship funded by BBSRC (BB/M010996/1). A.W.W. and the Rowett Institute receive core financial support from the Scottish Government Rural and Environmental Sciences and Analytical Services (SG-RESAS). We would like to thank all of those who were involved in creating and publicly sharing both the Hungate Collection data and the RUG data. | en |
| dc.description.status | Peer reviewed | en |
| dc.format.extent | 3667530 | |
| dc.identifier | 219633981 | |
| dc.identifier | da67e897-eead-416f-9d7b-12b214517868 | |
| dc.identifier | 36401288 | |
| dc.identifier | 85161227807 | |
| dc.identifier.citation | Smith, R L, Glendinning, L, Walker, A & Watson, M 2022, 'Investigating the impact of database choice on the accuracy of metagenomic read classification for the rumen microbiome', Animal Microbiome, vol. 4, 57. https://doi.org/10.1186/s42523-022-00207-7 | en |
| dc.identifier.doi | 10.1186/s42523-022-00207-7 | |
| dc.identifier.issn | 2524-4671 | |
| dc.identifier.other | ORCID: /0000-0001-5099-8495/work/123848333 | |
| dc.identifier.uri | https://hdl.handle.net/2164/19264 | |
| dc.identifier.vol | 4 | en |
| dc.language.iso | eng | |
| dc.relation.ispartof | Animal Microbiome | en |
| dc.subject | Metagenome-assembled genomes | en |
| dc.subject | Metagenome | en |
| dc.subject | Rumen | en |
| dc.subject | Microbiome | en |
| dc.subject | Reference databases | en |
| dc.subject | Read classification | en |
| dc.subject | Taxonomy | en |
| dc.subject | R Medicine | en |
| dc.subject | Biotechnology and Biological Sciences Research Council (BBSRC) | en |
| dc.subject | BB/S006680/1 | en |
| dc.subject | BB/R015023/1 | en |
| dc.subject | BBS/E/D/30002276 | en |
| dc.subject | BB/M010996/1 | en |
| dc.subject | Rural and Environmental Science and Analytical Services (RESAS) | en |
| dc.subject.lcc | R | en |
| dc.title | Investigating the impact of database choice on the accuracy of metagenomic read classification for the rumen microbiome | en |
| dc.type | Journal article | en |
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