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LiSEQ – whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe

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dc.contributor.authorPainset, Anaïs
dc.contributor.authorBjörkman, Jonas T.
dc.contributor.authorKiil, Kristoffer
dc.contributor.authorGuillier, Laurent
dc.contributor.authorMariet, Jean-François
dc.contributor.authorFélix, Benjamin
dc.contributor.authorAmar, Corinne
dc.contributor.authorRotariu, Ovidiu
dc.contributor.authorRoussel, Sophie
dc.contributor.authorPerez-Reche, Francisco
dc.contributor.authorBrisse, Sylvain
dc.contributor.authorMoura, Alexandra
dc.contributor.authorLecuit, Marc
dc.contributor.authorForbes, Ken
dc.contributor.authorStrachan, Norval
dc.contributor.authorGrant, Kathie
dc.contributor.authorMøller-Nielsen, Eva
dc.contributor.authorDallman, Timothy J.
dc.contributor.institutionUniversity of Aberdeen.Other Applied Health Sciencesen
dc.contributor.institutionUniversity of Aberdeen.Physicsen
dc.contributor.institutionUniversity of Aberdeen.Institute for Complex Systems and Mathematical Biology (ICSMB)en
dc.contributor.institutionUniversity of Aberdeen.Applied Medicineen
dc.contributor.institutionUniversity of Aberdeen.Environment and Food Securityen
dc.date.accessioned2019-03-04T09:00:21Z
dc.date.available2019-03-04T09:00:21Z
dc.date.issued2019-02
dc.descriptionFunding information This work was funded by EFSA, contract number C/EFSA/BIOCONTAM/2014/01-CT 1 on “Closing gaps for performing a risk assessment on Listeria monocytogenes in ready-to-eat (RTE) foods: activity 3, the comparison of isolates from different compartments along the food chain, and from humans using whole genome sequencing (WGS) analysis’, EFSA-Q-2014-00 026. Acknowledgements A. P., T. D. and K. G. are affiliated to the National Institute for Health Research – Health Protection Research Unit (NIHR HPRU) in Gastrointestinal Infections at University of Liverpool in partnership with Public Health England, in collaboration with the University of East Anglia, the University of Oxford and the Quadram Institute. A. P., T. D. and K. G. are based at Public Health England. The views expressed are those of the author(s) and not necessarily those of the NHS, the NIHR, the Department of Health or Public Health England.en
dc.description.statusPeer revieweden
dc.format.extent11
dc.format.extent1815430
dc.identifier142292661
dc.identifier4e5079d3-fbc1-4bd3-8757-807ae7522bc7
dc.identifier85062427972
dc.identifier000460106600009
dc.identifier30775964
dc.identifier.citationPainset, A, Björkman, J T, Kiil, K, Guillier, L, Mariet, J-F, Félix, B, Amar, C, Rotariu, O, Roussel, S, Perez-Reche, F, Brisse, S, Moura, A, Lecuit, M, Forbes, K, Strachan, N, Grant, K, Møller-Nielsen, E & Dallman, T J 2019, 'LiSEQ – whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe', Microbial Genomics, vol. 5, no. 2, 000257. https://doi.org/10.1099/mgen.0.000257en
dc.identifier.doi10.1099/mgen.0.000257
dc.identifier.iss2en
dc.identifier.issn2057-5858
dc.identifier.otherBibtex: urn:9b6551ab0f2354680792105b295593b7
dc.identifier.otherMendeley: fede24cb-f72b-3412-b754-c770d9df9ae5
dc.identifier.urihttp://hdl.handle.net/2164/11992
dc.identifier.urlhttp://www.scopus.com/inward/record.url?scp=85062427972&partnerID=8YFLogxKen
dc.identifier.urlhttp://www.mendeley.com/research/liseq-wholegenome-sequencing-crosssectional-survey-listeria-monocytogenes-readytoeat-foods-human-clien
dc.identifier.vol5en
dc.language.isoeng
dc.relation.ispartofMicrobial Genomicsen
dc.subjectSDG 3 - Good Health and Well-beingen
dc.subjectphylogenyen
dc.subjecthumanen
dc.subjectListeria monocytogenesen
dc.subjectwhole-genome sequencingen
dc.subjectfooden
dc.subjectgenetic diversityen
dc.subjectHumanen
dc.subjectWhole-genome sequencingen
dc.subjectGenetic diversityen
dc.subjectPhylogenyen
dc.subjectFooden
dc.subjectSTRAINSen
dc.subjectALIGNMENTen
dc.subjectRESISTANCEen
dc.subjectSURVEILLANCEen
dc.subjectRISK-ASSESSMENTen
dc.subjectQR Microbiologyen
dc.subjectQH426 Geneticsen
dc.subjectEpidemiologyen
dc.subjectMicrobiologyen
dc.subjectMolecular Biologyen
dc.subjectGeneticsen
dc.subject.lccQRen
dc.subject.lccQH426en
dc.titleLiSEQ – whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europeen
dc.typeJournal articleen

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