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Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification

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dc.contributor.authorRobertson, Fiona M
dc.contributor.authorGundappa, Manu Kumar
dc.contributor.authorGrammes, Fabian
dc.contributor.authorHvidsten, Torgeir R.
dc.contributor.authorRedmond, Anthony
dc.contributor.authorLien, Sigbjorn
dc.contributor.authorHolland, Peter W.H.
dc.contributor.authorMartin, Samuel A. M.
dc.contributor.authorSandve, Simen R.
dc.contributor.authorMacQueen, Daniel J.
dc.contributor.institutionUniversity of Aberdeen.Biological Sciencesen
dc.contributor.institutionUniversity of Aberdeen.Biological Sciencesen
dc.contributor.institutionUniversity of Aberdeen.Marine Alliance for Science and Technology for Scotland (MASTS)en
dc.contributor.institutionUniversity of Aberdeen.Scottish Fish Immunology Research Centreen
dc.contributor.institutionUniversity of Aberdeen.Centre for Genome-Enabled Biology and Medicineen
dc.date.accessioned2017-06-26T10:00:10Z
dc.date.available2017-06-26T10:00:10Z
dc.date.issued2017-06-14
dc.descriptionFunding The study was funded by a Natural Environment Research Council (NERC) grant (NBAF704). FMR is funded by a NERC Doctoral Training Grant (NE/L50175X/1). MKG is funded by an Elphinstone PhD Scholarship from the University of Aberdeen, with additional financial support from a scholarship from the Government of Karnataka, India. Availability of data and materials Illumina sequence reads for the sequence capture study were deposited in NCBI (Bioproject PRJNA325617). All sequence alignments and phylogenetic trees used for phylogenomics are provided in Additional file 2 . Illumina sequence reads for the tissue expression study performed under controlled conditions can be found in the NCBI SRA database (accessions SRX608594, SRS64003, SRS640030, SRS640015, SRS640003, SRS639997, SRS639041, SRS640021, SRS639990l, SRS639861, SRS640009, SRS639992, SRS639037, SRS640002, SRS639994). Illumina sequence reads for the fresh to saltwater transition experiment were deposited in the European Nucleotide Archive (accession number SRP095919).en
dc.description.statusPeer revieweden
dc.format.extent14
dc.format.extent2440179
dc.identifier100834556
dc.identifier9e7a73fc-5d0e-47b7-ab03-1906455c1c45
dc.identifier28615063
dc.identifier85020715202
dc.identifier.citationRobertson, F M, Gundappa, M K, Grammes, F, Hvidsten, T R, Redmond, A, Lien, S, Holland, P W H, Martin, S A M, Sandve, S R & MacQueen, D J 2017, 'Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification', Genome Biology, vol. 18, 111. https://doi.org/10.1186/s13059-017-1241-zen
dc.identifier.doi10.1186/s13059-017-1241-z
dc.identifier.issn1474-760X
dc.identifier.otherORCID: /0000-0003-0289-6317/work/154626908
dc.identifier.urihttp://hdl.handle.net/2164/8868
dc.identifier.vol18en
dc.language.isoeng
dc.relation.ispartofGenome Biologyen
dc.subjectwhole genome duplicationen
dc.subjectrediploidizationen
dc.subjectspecies radiationen
dc.subjectLineage-specific Ohnologue Resolution (LORe)en
dc.subjectduplicate genesen
dc.subjectfunctional divergenceen
dc.subjectautotetraploidizationen
dc.subjectsalmonid fishen
dc.subjectQH301 Biologyen
dc.subjectNatural Environment Research Council (NERC)en
dc.subjectNE/L50175X/1en
dc.subjectNBAF704en
dc.subjectSupplementary Dataen
dc.subject.lccQH301en
dc.titleLineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversificationen
dc.typeJournal articleen

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