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SLIDR and SLOPPR : flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data

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dc.contributor.authorWenzel, Marius
dc.contributor.authorMuller, Berndt
dc.contributor.authorPettitt, Jonathan
dc.contributor.institutionUniversity of Aberdeen.Biological Sciencesen
dc.contributor.institutionUniversity of Aberdeen.Medical Sciencesen
dc.contributor.institutionUniversity of Aberdeen.Molecular and Cellular Functionen
dc.contributor.institutionUniversity of Aberdeen.Institute of Medical Sciencesen
dc.date.accessioned2021-03-23T11:05:01Z
dc.date.available2021-03-23T11:05:01Z
dc.date.issued2021-03-22
dc.descriptionAcknowledgements The authors thank Bernadette Connolly for helpful discussions and Andreea Marin, David MacLeod and Lucrezia Piccicacchi for testing the pipelines. The authors acknowledge the support of the Maxwell and MacLeod computer clusters funded by the University of Aberdeen. Funding This work was supported by the Biotechnology and Biological Sciences Research Council [BB/J007137/1 to JP and BM, and BB/T002859/1 to BM and JP]. The funding body had no role in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript.en
dc.description.statusPeer revieweden
dc.format.extent30
dc.format.extent1933767
dc.identifier190248617
dc.identifierf24546a2-cb58-4077-b710-a293764d6193
dc.identifier85103114076
dc.identifier.citationWenzel, M, Muller, B & Pettitt, J 2021, 'SLIDR and SLOPPR : flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data', BMC Bioinformatics, vol. 22, 140. https://doi.org/10.1186/s12859-021-04009-7en
dc.identifier.doi10.1186/s12859-021-04009-7
dc.identifier.issn1471-2105
dc.identifier.otherORCID: 0000-0003-0093-368X
dc.identifier.otherORCID: 0000-0003-1279-5421
dc.identifier.otherORCID: 0000-0001-7988-6833
dc.identifier.otherORCID: /0000-0003-1279-5421/work/91892299
dc.identifier.otherORCID: /0000-0003-0093-368X/work/113225395
dc.identifier.otherORCID: /0000-0001-7988-6833/work/160389551
dc.identifier.urihttps://hdl.handle.net/2164/16101
dc.identifier.vol22en
dc.language.isoeng
dc.relation.ispartofBMC Bioinformaticsen
dc.subjectSpliced-leader trans-splicingen
dc.subjectEukaryotic operonsen
dc.subjectPolycistronic RNA processingen
dc.subjectRNA-seqen
dc.subjectGenome annotationen
dc.subjectChimeric readsen
dc.subject5′ UTRen
dc.subjectQH301 Biologyen
dc.subjectBiotechnology and Biological Sciences Research Council (BBSRC)en
dc.subjectBB/J007137/1en
dc.subjectBB/T002859/1en
dc.subjectSupplementary Dataen
dc.subject.lccQH301en
dc.titleSLIDR and SLOPPR : flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq dataen
dc.typeJournal articleen

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