University of Aberdeen logo

AURA - Aberdeen University Research Archive

 

The structural variation landscape in 492 Atlantic salmon genomes

Simple item page
dc.contributor.authorBertolotti, Alicia C
dc.contributor.authorLayer, Ryan M.
dc.contributor.authorGundappa, Manu Kumar
dc.contributor.authorGallagher, Michael D
dc.contributor.authorPehlivanoglu, Ege
dc.contributor.authorNome, Torfinn
dc.contributor.authorRobledo, Diego
dc.contributor.authorKent , Matthew P.
dc.contributor.authorRøsæg, Line L.
dc.contributor.authorHolen, Matilde M.
dc.contributor.authorMulugeta, Teshome D.
dc.contributor.authorAshton, Thomas J.
dc.contributor.authorHindar, Kjetil
dc.contributor.authorSægrov, Harald
dc.contributor.authorFlorø-Larsen, Bjørn
dc.contributor.authorErkinaro, Jaakko
dc.contributor.authorPrimmer, Craig R
dc.contributor.authorBernatchez, Louis
dc.contributor.authorMartin, Samuel A M
dc.contributor.authorJohnston, Ian A
dc.contributor.authorSandve, Simen R.
dc.contributor.authorLien, Sigbjorn
dc.contributor.authorMacQueen, Daniel John
dc.contributor.institutionUniversity of Aberdeen.Marine Alliance for Science and Technology for Scotland (MASTS)en
dc.contributor.institutionUniversity of Aberdeen.Biological Sciencesen
dc.contributor.institutionUniversity of Aberdeen.Scottish Fish Immunology Research Centreen
dc.date.accessioned2020-10-22T15:11:01Z
dc.date.available2020-10-22T15:11:01Z
dc.date.issued2020-10-14
dc.descriptionAcknowledgements: The study was supported by Biotechnology and Biological Sciences Research Council grants BB/M016455/1, BB/S004181/1, BBS/E/D/10002070 and BBS/E/D/30002275. Wild Atlantic salmon genome sequencing was funded by the Research Council of Norway (The Aqua Genome project; ref: 221734). We thank Dr. Chris Hollenbeck (formerly Xelect Ltd; currently Texas A&M, USA) for support with Snakemake and Drs. Serap Gonen and Matt Baranski (Mowi AS) for sharing sequencing data. We thank Terese Andersstuen and Dr. Mariann Árnyasi (both NMBU) for organizing the sequencing of wild Atlantic salmon samples. We acknowledge the use of computing clusters at the University of Aberdeen (Maxwell), University of Edinburgh (EDDIE) and CIGENE, NMBU (Orion). Storage resources were provided by the Norwegian National Infrastructure for Research Data (NIRD, project NS9055K). D.J.M. thanks Prof. Seth Grant (University of Edinburgh) for helpful discussion concerning the Atlantic salmon SV outliers and synaptic genes.en
dc.description.statusPeer revieweden
dc.format.extent16
dc.format.extent1879186
dc.identifier178242039
dc.identifier1fc9cd0c-e666-4b7d-b687-3b48b69df497
dc.identifier85092563101
dc.identifier33056985
dc.identifier000582680400012
dc.identifier.citationBertolotti, A C, Layer, R M, Gundappa, M K, Gallagher, M D, Pehlivanoglu, E, Nome, T, Robledo, D, Kent , M P, Røsæg, L L, Holen, M M, Mulugeta, T D, Ashton, T J, Hindar, K, Sægrov, H, Florø-Larsen, B, Erkinaro, J, Primmer, C R, Bernatchez, L, Martin, S A M, Johnston, I A, Sandve, S R, Lien, S & MacQueen, D J 2020, 'The structural variation landscape in 492 Atlantic salmon genomes', Nature Communications, vol. 11, 5176. https://doi.org/10.1038/s41467-020-18972-xen
dc.identifier.doi10.1038/s41467-020-18972-x
dc.identifier.issn2041-1723
dc.identifier.otherORCID: /0000-0003-0289-6317/work/154626897
dc.identifier.urihttps://hdl.handle.net/2164/15273
dc.identifier.urlhttp://www.scopus.com/inward/record.url?scp=85092563101&partnerID=8YFLogxKen
dc.identifier.vol11en
dc.language.isoeng
dc.relation.ispartofNature Communicationsen
dc.subjectALIGNMENTen
dc.subjectGENETICSen
dc.subjectEVOLUTIONen
dc.subjectBEHAVIORen
dc.subjectFORMATen
dc.subjectTOOLen
dc.subjectQH301 Biologyen
dc.subjectGeneral Physics and Astronomyen
dc.subjectGeneral Chemistryen
dc.subjectGeneral Biochemistry,Genetics and Molecular Biologyen
dc.subjectBiotechnology and Biological Sciences Research Council (BBSRC)en
dc.subjectBB/M016455/1en
dc.subjectBB/S004181/1en
dc.subjectBBS/E/D/10002070en
dc.subjectBBS/E/D/30002275en
dc.subjectSupplementary Dataen
dc.subject.lccQH301en
dc.titleThe structural variation landscape in 492 Atlantic salmon genomesen
dc.typeJournal articleen

Files

Original bundle

Now showing 1 - 1 of 1
Thumbnail Image
Name:
Bertolotti_et_al_NC_TheStructuralVariationLandscape_VoR.pdf
Size:
1.79 MB
Format:
Adobe Portable Document Format
Download

Collections

All research

The Sir Duncan Rice Library

University of Aberdeen

Bedford Road

Aberdeen

AB24 3AA


Tel: +44 (0)1224 273330

Email: library@abdn.ac.uk

Share and keep up to date


FacebookTwitterWordpress